Rubus genomics research - Markers
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Polymorphic SSR primer pairs developed from genomic DNA
| Code | Repeat motif | Primers | Allele sizes Latham | Allele sizes Glen Moy |
| Rubus1b | (ta)12-(ag)10 | L: cctcttcaccgatttagacca R: tttagccccagtccaaaagtt | 212, 234 | 200, 229 |
| Rubus2a | (gt)12-g-(gt)8 | L: tgagggaagaagaggcaaga R: cacgtgtgaccccaatgata | 175, 180 | 180, 188 |
| Rubus4a | (ct)14(ca)16 | L: agcgaattgcatctctctctc R: gcactgaaaaatcatgcatctg | 143 | 139, 143 |
| Rubus6a | (ct)16(ca)32 | L: tgcatgtgactttgcatctct R: gcactgaaaaatcatgcatctg | 139 | 139, 150 |
| Rubus12a | (ct)7(at)6(gt)10 | L: attccccgcctcagaataat R: aaggtttgtgacgggaacag | 130, 150 | 141 |
| Rubus16a | (at)8(gt)11 | L: tgttgtacgtgttgggcttt R: gggtgtttgccagtttcagt | 145, 155 | 145, 155 |
| Rubusr19a | (ta)5 | L: gcagatcaatgaaagcccatt R: cggatcctccaaccttcat | 189, 199 | 201 |
| Rubus20a | (a)14 | L: tgacataatgcatgaagggaaa R: cactatggttggccacagg | 139 | 150, 154 |
| Rubus22a | (at)16(gt)5 | L: tgtggacgaccataacttgc R: tcggcatttatacacacacaca | 140, 150 | 150 |
| Rubus24a | (at)5 | L: acacacgcacgtacagcact R: gcgcagtcaagtggactttt | 155, null | 166 |
| Rubus25a | (gt)8 | L: gccaaacacaccgttatcttg R: cattaccacacgcttgatgc | 144, 150 | 144 |
| Rubus26a | (ct)11(ca)29 | L: aacaccggcttctaaggtct R: gatcctggaaagcgatgaaa | 122, 150 | 150 |
| Rubusr35a | (ct)8 | L: ttggaagcacaaaagcgata R: gcgacagccaaaacaaaagt | 210, 226 | 226 |
| Rubusr43a | (ct)5 | L: tgcctaaagtttgctgctga R: tcgaatgtaactgcgagtgc | 201, 209 | 201 |
| Rubus45c | (t)10-(a)11-(ga)15 | L: gaggggcaattaaagggttt R: tgttgtaatttggtttatccttgg | 215, 245 | 228, null |
| Rubusr47a | (ct)7-(ta)7 | L: aagcaggacacctcagatgc R: cagccaaccatcatcagcta | 203, 244 | 203 |
| Rubus49a | (ta)7-(ga)7 | L: cagccaaccatcatcagcta R: ttgttttcaggaggcaggac | 166, 182 | 166, 182 |
| Rubusr56a | (tg)12(ag)11 | L: tggagattccaaataaacaaataccc R: tgtgtaaaccgttggatgaa | 212, 245 | 212 |
| Rubus57a | (ag)11 | L: atgtgtgggggaagataacg R: tgtccccaacatttcatacaaa | 155 | 155, 185 |
| Rubusr59b | (ct)9 | L: ctcctcctctttcctcgtca R: aagtgctgctgatgtgttgc | 279, 240 | 279 |
| Rubusr76b | (ct)5-(ct)4 | L: ctcacccgaaatgttcaacc R: ggctaggccgaatgactaca | 250, 340 | 250, 340 |
| Rubus98d | (gaa)5-(ga)6 | L: ggcttctcaatttgctgtgtc R: tgatttgaaatcgtgcggtta | 173, 178 | 178 |
| Rubus102c | (c )9(a)10 | L: cccctcccctctctgtagat R: tcatgtgcaaacccgtacac | 95, 123 | 123 |
| Rubus105b | (ag)8 | L: gaaaatgcaaggcgaattgt R: tccatcaccaacaccaccta | 158, 190 | 158, 164 |
| Rubus107a | (ag)8 | L: gccagcaccaaaaacctaca R: tttcaccgtcaagaagaaagc | 155, 160 | 155 |
| Rubus110a | (tc)8 | L: aaacaaaggataaagtgggaagg R: tgtcagttggagggagaaca | 180, 157 | 157 |
| Rubus116a | (ct)12-(t)10 | L: ccaacccaaaaaccttcaac R: gttgtggcatggccttttat | 185, 190 | 193 |
| Rubus117b | (cata)6-(ga)8 | L: ccaactgaaacctcatgcac R: acttggtcctgttggtctgg | 246, 286 | 240, 246 |
| Rubus118b | (ct)25 | L: ccgcaaaacaaaaggtcaag R: ggattcttgccaaagtcgaa | 104, 112 | 137 |
| Rubus119a | (ga)8 | L: gagcaaaacaaacacagatcaaa R: ctccaagtagtcacgcagca | 147, 150 | 147 |
| Rubus123a | (ag)8 | L: cagcagctagcattttactgga R: gcactctccacccatttcat | 170, null | 140, 150 |
| Rubus124a | (at)9 | L: atgagcgcgaaatgtggtat R: gtggaagttgttgtcgctca | 150, 162 | 150 |
| Rubus126b | (ct)31(ca)22 | L: cctgcatttttctgtattttgg R: tcagttttcttcccacggtta | 150, 164 | 164, 201 |
| Rubus137a | (tg)8-(ta)4 | L: tgtgagcagagtgaaggagcta R: agcattattcgcgcagtttt | 179, 187 | 179 |
| Rubus145a | (gt)7 | L: tgtcccagctttctggtttc R: ggcatctgtgcggtaaaaat | 131 | 139, 142 |
| Rubus153a | (gt)11 | L: cccagcttcagttggaaaga R: agaggctcatttgccttgaa | 154, 156 | 156 |
| Rubus160a | (ct)7 | L: tccaactcggattctccatc R: tatgtgagctgggcatggt | 155, 160 | 155 |
| Rubus163a | (ga)35 | L: tgttgtcctctgcaaccatt R: gcatagcccacaattagcaa | 203 | 203, 207 |
| Rubus166b | (tc)15 | L: ccgcaagggttgtatcctaa R: gcatgagggcgatataaagg | 215, 221 | 219, 224 |
| Rubus167a | (tc)9 | L: aaccctaagccaaggaccat R: caccacccatgacagtcaga | 166, 182 | 164, 180 |
| Rubus194h | (ga)12 | L: tgtgttgttctctgcaacca R: agcccttacttttcctgcaa | 100, 111 | 111, 115 |
| Rubus210a | (ct)25 | L: tcctgatggttgtctggttg R: ttcgaggcttttcagaaacaa | 101, 115 | 101, 115 |
| Rubus223a | (at)4-(ta)8-(at)10 | L: tctcttgcatgttgagattctatt R: ttaaggcgtcgtggataagg | 146, 151 | 138 |
| Rubus228a | (ga)41 | L: tggacagctttgtgcagagt R: gcttgcttgtatctccattgc | 118, 128 | 150 |
| Rubus233a | (ct)11 | L: tgctgctttgttattttgtgc R: ggtcaacaatccttggataatca | 190, 200 | 190 |
| Rubus237b | ((ttttc)3 | L: catgcttgcatgatcaccac R: tgagccataaatttagagggatt | 134 | 136, 147 |
| Rubus243a | (ct)12 | L: tgagcgagatgattggagtg R: tatgtggtgatcatgcaagc | 140 | 140, 174 |
| Rubus251a | (ga)10 | L: gcatcagccattgaatttcc R: cccacctccattaccaactc | 157,183 | 157 |
| Rubus252a | (ta)7-(ag)7 | L: cattggctacaggcaactca R: ttggcacaagtggacagaag | 128 | 128, 140 |
| Rubus253a | (ct)34(at)11 | L: acctccaaatgccatagtgc R: caagaatctgatctcgtcttagca | 153, 165 | 153 |
| Rubus256e | (ctt)7(ct)8(at)10(ac)5 | L: caacctgaaaaccaaactcg R: ctgagagcctgagaggtggt | 172, 211 | 141 |
| Rubus257a | (ct)4-(ct)6 | L: ctcatcccaacaggtgtacg R: gagactccatggcgagaaag | 181, 185 | 158, 185 |
| Rubus259f | (ct)4-(ag)8 | L: tggcacaagaagcctgtaac R: tcccatatccctcagcattc | 244, 252 | 247 |
| Rubus260a | (ga)13 | L: ttcggaatttcggatcaaac R: gagagatctgacttgccaacg | 165, 173 | 147 |
| Rubus262b | (ag)15 | L: tgcatgaaggcgatataaagg R: tccgcaagggttgtatccta | 217, 225 | 225 |
| Rubus263f | (at)16-(ca)4 | L: attccgccctgcataaatc R: ggaaattggaaaccattgga | 241, 253 | 253 |
| Rubus264b | (ga)5-(gaaa)3(ga)7 | L: tgcacagtttagggcaaaatc R: atcaggctgcatttttacgc | 175, 186 | 175, 186 |
| Rubus268b | (ga)10 | L: ccaagacaatgacctgagca R: ggacagggttccacagagtg | 177, 183 | 183, 204 |
| Rubus270a | (ga)10 | L: gcatcagccattgaatttcc R: cccacctccattaccaactc | 167, 185 | 158 |
| Rubus275a | (ag)27 | L: cacaaccagtcccgagaaat R: catttcatccaaatgcaacc | 130 | 114, 145 |
| Rubus277a | (a)11(ag)8 | L: gccccatcctgtacaaagaa R: ttgcaacaaaggtacgtaatgg | 234, 250 | 234 |
| Rubus279a | (ga)21 | L: tcgacatggctagttctacacag R: ccccaacttaaaccattctca | 110, 132 | 120 |
| Rubus280a | (ag)13 | L: ttcggaatttcggatcaaac R: cgaccaaaaaggaactcagc | 183, 191 | 165 |
| Rubus285a | (tc)9 | L: tcgagaagcttgctatgctg R: ggatacctcaatggctttcttg | 167, null | 138 |
| Rubus289a | (ct)12 | L: ttgcaccctagcatgtagca R: gaggtgaaaagggaacacga | 139 | 139, 166 |
| Rubus293b | (tc)9 | L: atggccaatgaacctaccag R: tgttgatgtgttgccatattga | 180 | 159, 192 |
