Rubus Genomics Markers - 2

Rubus genomics research - Markers

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SSR markers developed from PstI library

Marker	Repeat	Primers	Expected size	Alleles Latham Glen Moy
Rub5a	(T)9	L: cccaggtatttcacctttgc R: cccaaatttagcctcttatgga	155	155, 160 x 155	Mapped
Rub6b	(GTA)5	L: ccaccgactttggtcgataa  R: aacaaaagcaaaaggtcaatcc	117	115 x 113, 115
Rub17a	(T)11	L: cctttgggactaggtttcca R: gcattatcaccttcccttgg	147	145, 147 x 147, null
Rub30a	(T)13	L: agacagggccacgtgtgta R: gggtgggagggaaatgatta	148	159 x 143
Rub103a	(T)12	L: tgcagattttggtggtgaag R: ccattgcacaaaaccaatga	150	145,150 x 150	Mapped
Rub120a	(CT)9-(AT)5	L: aagcccttctgcattcgata R: ttgcaaattgaaattaggagca	189	181, 189 x 189
Rub145a	(gt)7	L: tgtcccagctttctggtttc R: ggcatctgtgcggtaaaaat	131	131, null x 139, 146
Rub149d1	(cat)3-(aat)5	L: cacacacacacagagcaagc R:aaaaaggaaaggaaaagggttt	182	182, 190 x 182
Rub177a1	(ct)6	L:ctcttcttcgcccagcaat R: cattcccagctcacatagca	154	152 x 154
Rub177a2	(ct)6	L: ctcttcttcgcccagcaat R: cattcccagctcacatagca	154	195, 200 x 195, 200
Rub220a	(ga)11	L: gaaaatgcaaggcgaattgt R: tccatcaccaacaccaccta	158	156,192 x 158, 163	Mapped
Rub212a	(CT)21	L: gaaaaataggagaatgcttgtga R: aaaactacatgcgacgcaaa	145	120, 141 x 145	Mapped
Rub214b	(GA)13	L: atgagcttcttgccctgaaa R: tcaagcaaaagtcccactcc	142	133, 170 x 133, 142	Mapped
Rub221a	(tc)8	L: tggctgatgattctctgtcg  R: tctccattgccttcctcttc	161	161 x 161
Rub222e	(t)10-(a)11-(ga)15	L: gaggggcaattaaagggttt R: tgttgtaatttggtttatccttgg	229	229, null x 214, null	Mapped
Rub225a	(taa)3-(tat)5	L: gagtgagagagggtgagtctgaa  R: aagctggacaccatacatcaaa	188	188 x 188
Rub229a	(tc)7	L: gtgtgccgttggtcatattg R: aaagagcaggagcagagcag	149	168 x 149
Rub 232b	(ct)12	L: tgagcgagatgattggagtg R: tatgtggtgatcatgcaagc	138	164 x 138, 142	Mapped
Rub236b	(ga)9	L: tgtgccaagaactcatcgtc R: ccgaacgcctccctactt	142	139,158 x 137, 139	Mapped
Rub238h	(tgg)4	L: gtgacctccgagagcttgag R: cttcaccgccactagtaccc	128	113, 138 x 127
Rub244a	(ctt)5	L: cccaaattgtacccatccac R: aaacagcactgaagccaagc	156	147, null x 156, null
Rub259b	(ct)4-(ag)8	L: tggcacaagaagcctgtaac R: tcccatatccctcagcattc	247	242, 250 x 247	Mapped
Rub265a	(CT)7	L: agcacgtcagacgaaattga R: aaaatttgacgacccgtttc	145	135, 154 x 145	Mapped
Rub274a	(ct)5-(ct)4	L: cgatcacaaagcacgaaatg  R: cagccatagcccaaagagag	163	163 x 163
Rub278b	(ta)8-(gt)6	L: tgcctctctctatcgtctctctc R: tggttcactttccatgttgtt	170	154, 164 x 170, null
Rub284a	(ctc)3-(tc)9	L: catggtccttgcaattcctt R: ttatgtgccgctgatgtgtt	137	134, 161 x 137	Mapped