Rubus genomics research - Markers
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SSR markers developed by screening form a nebulised DNA library
| Code | Repeat | Primers | Expected size | Alleles Latham Glen Moy | |
| Neb1A10 | (GA)4-(GAGGA)2 | L: ccgtcttcttcgtctcaacc R: ccggaatcccaaactttctc | 248 | 246, 252 x 252 | |
| Neb1A21 | (GCC)3-(GGCC)4 | L: cctcggggtagacgatcac R: caaaggcgtccctgttcc | 159 | 159 x 161 | |
| Neb1C15 | (GTT)5-(GTT)3 | L: ttctttcgaactcgctgagg R: gctttcggaatagcaaaatcc | 194 | 194 x 194 | |
| Neb1D05 | (GTT)5 | L: agaaccacaagcaccaatcc R: ccttgctctgtgcagtttga | 172 | 172 x 172 | |
| Neb1G02 | (CT)9 | L: tattggcgcttcgtctacct R: gaagcagcaatctgcaacaa | 250 | 250 x 250 | |
| Neb1H15 | (GAA)5 | L: ccaccaagcttctccatttc R: aacgcactttttgcagcttt | 177 | 176, 196 x 176 | Mapped |
| Neb1I07 | (A)4(TC)2(A)7(G)2(A)3 | L: ccccgaacacagcttacaac R: caaagagtcgggtggaaaag | 189 | 189 x 189 | |
| Neb1J15 | (CTT)5 | L: ggtgcgcttcttggagaac R: ctagcaccggaaccctagc | 219 | 219 x 219 | |
| Neb1K24 | (AT)2(CAT)3 | L: tcattcattgctttgtcatcg R: taggcagcttcgacactgtt | 204 | 204 x 204 | |
| Neb1N07b | (GT)7 -(CAGA)4 | L: tgaagacccccttgatcttg R: tcacgaatcctaagcacaaca | 169 | 169 x 169 | |
| Neb1O10 | (T)10 | L: ttgcaaaacacaccatgaaga R: cgattggtgctattgtttactaaatg | 173 | 173 x 173 | |
| NebA09b | (T)7-(GA) | L: caaaagctgaacgtaccgaaa R: ataagaagggtgccacatcg | 230 | 231, 239 x 231 | Mapped |
| NebA22 | (T)12 | L: gccgtccaatctaatcttgc R: cgattgagtcgcagacagag | 106 | 102 x 100, 104 | |
| NebH24 | (CA)2-(TA)4 | L: gatgcggcagcttgataaac R: cgattcaagctctagaattatcca | 155 | 153, 155 x 151 | Mapped |
| Norp4c8b | (A)8-(GA)5 | L: cgattaagagttgcagaagaagg R: ccgtaatagcccaaccagaa | 188 | 188, 192 x 188 | Mapped |
| Norp2o23 | (CT)8 | L: gagaagacgtcagccaccag R: ttgaagagaaagggaaggaaga | 224 | 222, 224 x 224 | Mapped |
