Rubus genomics research - Markers
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Polymorphic SSR primer pairs developed from c-DNA
| cDNA | Repeat motif | Primers | Latham x Moy | Homology (E value) |
| RubfruitE4 | (ggttt)10 | L: tcaaggctcctgctttaacc R: gcagagttggagacatgaa | 158, 160 x 160 | AP004942(121/2e-24) transcription factor |
| RubfruitE8 | (ct)4(ta)4(ct)3 | L: cataacctccagtggttcc R: tgatgatgtcgatgcaggtt | 180, 185 x 185 | AF220491(214/1e-52) o-methyltransferase |
| RubfruitG7 | (ct)22 | L: ggcacgagtcaagctctct R: tggtttgtggttttgaagca | 140, null x 159 | no homology |
| RubfruitC1 | ctt-(cct)7 | L: cacgagcttcatcctcttcc R: atccaaagcttttgcgattg | 160, 170 x 160, 165 | AY063105(133/5e-28) ribosomal protein 1 |
| Rubleaf86 | (gt)9 | L: ggaactttggagccacctac R: tcggcaggttattcatttgt | 235, 230 x 235 | AJ131096(105/1e-19) microsatellite |
| Rubleaf97 | (ctt)-(cct)9 | L: aacaaagctcctcgaccaga R: tcgagatggtcagtccaaca | 205, 210 x 205 | ATCYC2B(139/6e-30) cyclin 2b protein |
| Rubleaf107 | (ta)10 | L: gcggcaagctcatatactcc R: ggcaagcttgaatgaatcct | 210, 218 x 220 | no homology |
| Rubleaf102 | (cat-)16 | L: gcacgagcctcatcatcttc R: gatgttcgggccttttgtaa | 230, 240 x 230 | no homology |
